Methodology is also a term used in the sciences and humanities: natural science, sociology, psychology, economics, mathematics, computer science and even philosophy.

Most commonly, it is meant to refer to the axioms (or assumed beliefs) that act as the foundation of our inquiry, as well as the form that the inquiry should take. In a wide sense, it refers to the form that an inquiry might take. A methodology, in most cases, does not include the theoretical results of an inquiry, though certain results might be the aim. If a methodology gives rise to certain results by methodologically assuming them, the methodology will probably be considered flawed. A methodology and an application generally aim to produce some sort of result, some answer to our inquiry.

Of course, this form will not always be formally-analyzable. In many cases, an explication of a methodology might be more confusing and difficult than an implementation of it (most methodologies are constructed ad hoc, i.e., as we go).