- A Time to Stand
Captain Sisko and the crew of the Defiant take a captured Dominion ship on a mission into Dominion territory.
- Rocks and Shoals
After their ship is destroyed, the crew of the Defiant is trapped on a planet controlled by the Jem'Hadar.
- Sons and Daughters
Worf's son Alexander joins the crew of Martok's ship, and Gul Dukat's daughter Ziyal returns to Deep Space Nine.
- Behind the Lines
The resistance cell aboard Deep Space Nine attempts to sabotage the deflector array in an attempt to stop the Dominion from disabling the mine field.
- Favor the Bold
While the Dominion continues its efforts to destroy the mine field at the mouth of the wormhole, Sisko gathers his forces to retake the station.
- Sacrifice of Angels
The Defiant and the Federation fleet attempts to retake Deep Space Nine from the Dominion.
- You are Cordially Invited...
Jadzia and Worf have a traditional Klingon wedding aboard Deep Space Nine.
Vedek Bareil comes to Deep Space Nine from the mirror universe to steal the Orb of Prophecy and Change.
- Statistical Probabilities
Doctor Bashir helps a group of genetically engineered humans who calculate that if the Federation does not surrender to the Dominion the war will be lost with billions of casualties.
- The Magnificent Ferengi
Quark and a gang of Ferengi misfits travel to Empok Nor to negotiate with the Dominion for the return of Quark's mother.
Captain Sisko and Gul Dukat are stranded on a planet after their ship is shot down.
- Who Mourns for Morn?
After Quark's best customer dies, Quark inherits his entire fortune.
- Far Beyond the Stars
Captain Sisko has visions of being a black science fiction writer, fighting racism in the 1950's.
- One Little Ship
After their runabout is shrunk to the size of a comm badge, Dax, Worf, Doctor Bashir and Chief O'Brien must save the Defiant, which has been commandeered by the Jem'Hadar.
- Honor Among Thieves
Chief O'Brien infiltrates the Orion Syndicate to find out about a Starfleet double agent on Risa.
- Change of Heart
Worf and Dax are stranded on a planet together after they fail to rendezvous with a Cardassian defector.
- Wrongs Darker than Death or Night
Kira finds out that her mother was one of Dukat's comfort girls on Terok Nor during the occupation. She uses the Orb of Time to travel back in time to find out the truth.
Doctor Bashir is investigated by Starfleet, who believe he is a Dominion spy.
- In the Pale Moonlight
Captain Sisko and Garak attempt to convince the Romulans to join them in the war against the Dominion.
- His Way
Holographic crooner Vic Fontaine helps Odo get together with Major Kira.
- The Reckoning
The discovery of an ancient Bajoran artifact triggers The Reckoning, a time when the Prophets and the Pah Wraiths fight for the future of Bajor.
Jake and Nog find a Defiant-class starship in Dominion space, being commanded completely by Starfleet Academy cadets.
- Profit and Lace
After Liquidator Brunt is appointed the new Grand Nagus, Quark, Ishka, and Zek must convince the chairman of Sluggo Cola to help them.
- Time's Orphan
Molly is lost in a time vortex on Bajor, which sends her three hundred years into the past. She is retrieved, but as an eighteen year old who no longer remembers her parents.
- The Sound of Her Voice
The Defiant responds to a distress call of a woman who has been dead for years.
- Tears of the Prophets
Captain Sisko launches an attack on the Cardassians, while Gul Dukat turns to the evil Pah Wraiths for help in winning the war.